You will have to use masks so CC doesn't try to find any matching points there. This was one of my feature request that CC would show also points(for example red) which doesn't match so it would be more clear what causes the problems. For moving objects(shadows,vehicles, people) CC still finds points but drop them as no match is found but it creates a hole in model which may or may not be filled from other photos so the accuracy is lower. Masks would allow to more precise define the area.
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